Некрасов Алексей Норбертович
|
Кандидат наук |
Работа в ИБХ
| 2019–2025 | Старший научный сотрудник | Лаборатория инженерии белка |
Степени и звания
| Кандидат наук (Физико-математические науки) | |
Научные результаты
1. Gabrielian A.E., Nekrasov A.N., Kirpichnikov M.P.
"Comparison of the predictive abilities of different methods based on information theory: searching for receptor-binding sites"
Biomed. Sci. (1991) vol. 2(5), pp. 481-484.
PMID: 1840836
2. Nekrasov A.N., Stepanov A.V., Timofeev V.P.
"The features of the spatial structure of the gramicidine A-cesium complex"
FEBS Lett. (1995) vol. 371(1), pp. 35-38.
DOI: 10.1016/0014-5793(95)00800-o
3. Nekrasov A.N., Mikhaleva I.I.
Biochem. Mol. Biol. Int. (1996) vol. 38(4), pp. 739-745.
PMID: 8728103
4. Nekrasov A.N., Lexikova E.E., Karelin A.A.
"Modeling of in vivo proteolytic degradation of hemoglobin" J. Biomol. Struct. Dyn. (1997) vol. 15(2), pp. 393-399.
DOI: 10.1080/07391102.1997.10508201
5. Rogov S.I., Nekrasov A.N.
"A numerical measure of amino acid residues similarity based on the analysis of their surroundings in natural protein sequences" Protein. Eng. (2001) vol. 14(7), pp. 459-463.
DOI: 10.1093/protein/14.7.459 Q1
6. Nekrasov A.N.
"Entropy of protein sequences: an integral approach"
J. Biomol. Struct. Dyn. (2002) vol. 20(1), pp. 87-92.
DOI: 10.1080/07391102.2002.10506825
7. Nekrasov A.N.
"Analysis of the information structure of protein sequences: a new method for analyzing the domain organization of proteins"
J. Biomol. Struct. Dyn. (2004) vol. 21(5), pp. 615-624.
DOI: 10.1080/07391102.2004.10506952
8. Svirshchevskaya E., Alekseeva L., Marchenko A., Benevolenskii S., Berzhec V.M., Nekrasov A.
"Selection of cryptic B-cell epitopes using informational analysis of protein sequences"
J. Bioinform. Comput. Biol. (2006) vol. 4(2), pp. 389-402.
DOI: 10.1142/s0219720006002053.
9. Alekseeva L., Nekrasov A., Marchenko A., Shevchenko M., Benevolenskii S., Sapozhnikov A., Kurup V.P., Svirshchevskaya E.
"Cryptic B-cell epitope identification through informational analysis of protein sequences"
Vaccine (2007) vol. 25(14), pp. 2688-2697.
DOI: 10.1016/j.vaccine.2006.07.003
10. Nekrasov A.N., Radchenko V.V., Shuvaeva T.M., Novoselov V.I., Fesenko E.E., Lipkin V.M.
"The Novel Approach to the Protein Design: Active Truncated Forms of Human 1-CYS Peroxiredoxin"
J. Biomol. Struct. Dyn. (2007) vol. 24(5), pp. 455-462.
DOI: 10.1080/07391102.2007.10507133
11. Anisimova V.E., Shcheglov A.S., Bogdanova E.A., Rebrikov D.V., Nekrasov A.N., Barsova E.V., Shagin D.A., Lukyanov S.A.
"Is crab duplex-specific nuclease a member of the Serratia family of non-specific nucleases?"
Gene (2008) vol. 418(1-2), pp. 41-48.
Epub 2008 Apr 16.
DOI: 10.1016/j.gene.2008.04.005. Q2
12. Nekrasov A.N., Zinchenko A.A.
"Hydrolases: The Correlation between Informational Structure and the Catalytic Centers Organization"
J. Biomol. Struct. Dyn. (2008) vol. 25(5), pp. 553-562.
DOI: 10.1080/07391102.2008.10507202
13. Briers Y., Miroshnikov K., Chertkov O., Nekrasov A., Mesyanzhinov V., Volckaert G., Lavigne R.
“The structural peptidoglycan hydrolase gp181 of bacteriophage phiKZ”
Biochem Biophys Res Commun. (2008) vol. 374(4), pp.747-751.
Epub 2008 Jul 29.
DOI: 10.1016/j.bbrc.2008.07.102.
14. Nekrasov A.N., Petrovskaya L.E., Toporova V.A., Kryukova E.A., Rodina A.V., Moskaleva E.Y., Kirpichnikov M.P. "Design of a novel interleukin-13 antagonist from analysis of informational structure" Biochemistry (Mosc). (2009) vol. 74(4), pp. 399-405.
DOI: 10.1134/s0006297909040075
15. Nekrasov A.N., Zinchenko A.А.
"Structural Features of the Interfaces in Enzyme-Inhibitor Complexes"
J. Biomol. Struct. Dyn. (2010) vol. 28(1), pp. 85-96.
DOI: 10.1080/07391102.2010.10507345
16. Shingarova L.N., Petrovskaia L.E., Nekrasov A.N., Kriukova E.A., Boldyreva E.F., Iakimov S.A., Gur'ianova S.V., Dolgikh D.A., Kirpichnikov M.P.
"Expression and Properties of Human TNF Peptide Fragments"
Russ. J. Bioorganic Chem. (2010), vol. 36, pp. 327–336,
DOI: 10.1134/s1068162010030040
17. Kobylyansky A.G., Nekrasov A.N., Kozlova V.I., Sandin M.Y., Alikhanov B.A., Demkin V.V.
"Detection of new epitopes of antibodies to filaggrin in filaggrin protein molecule"
Bull. Exp. Biol. Med. (2011) vol. 151(5), pp. 615-618.
DOI: 10.1371/journal.pone.0168542 Q3
18. Ostroverkhova T.V., Chertkova R.V., Nekrasov A.N., Dolgikh D.A., Kirpichnikov M.P.
"Design of Mutant Variants of Horse Cytochrome C by Analysis of Informational Structure Method and Testing its Biological Activity"
Moscow University Biological Sciences Bulletin (2011), vol. 66(2), pp. 65–67.
https://doi.org/10.3103/S0096392511020064
19. Anashkina A.A., Nekrasov A.N.
"The method for identification of hierarchical organization of protein sequences"
Russian Journal of Numerical Analysis and Mathematical Modelling (2014) vol. 29(5), pp. 266–273.
DOI: 10.1515/rnam-2014-0021 Q2
20. Mikhailova A.G., Nekrasov A.N., Zinchenko A.A., Rakitina T.V., Korzhenevsky D.A., Lipkin A.V., Razguljaeva O.A., Ovchinnikova M.V., Gorlenko V.A., Rumsh L.D.
"Truncated variants of Serratia proteamaculans oligopeptidase B having different activities"
Biochemistry (Moscow) (2015) 80(10), pp.1331-1343.
DOI: 10.1134/S0006297915100156.
21. Chertkova R.V., Brazhe N.A., Bryantseva T.V., Nekrasov A.N., Dolgikh D.A., Yusipovich A.I., Sosnovtseva O., Maksimov G.V., Rubin A.B., Kirpichnikov M.P.
"New insight into the mechanism of mitochondrial cytochrome c function"
PLoS One (2017) vol. 12(5): e0178280. eCollection 2017.
DOI: 10.1371/journal.pone.0178280.
22. Alexei N. Nekrasov, Ludmila G. Alekseeva, Rudolf А. Pogosyan, Dmitry A. Dolgikh, M.P. Kirpichnikov, Alexandre G. de Brevern, Anastasia A. Anashkina
"A minimum set of stable blocks for rational design of polypeptide chains"
Biochimie (2019), vol. 160, pp. 88-92.
DOI: 10.1016/j.biochi.2019.02.006
23. В.В. Радченко, Е.В. Ильницкая, Т.М. Шуваева, М.В. Александрова, А.В. Лунева, Ю.А. Лысенко, Н.Ю. Басова, А.Н. Некрасов, А.Г. Кощаев
"Сравнительный анализ и пробиотический потенциал новых штаммов рода Lactobacillus из эволюционно закрепленых микробных ассоциаций желудочно-кишечного тракта дикой птицы"
Биофармацевтический журнал (2020) том 12, номер 1, стр. 25–30.
DOI: 10.30906/2073-8099-2020-12-1-25-30
24. A.I. Mikhalskii, I.V. Petrov, 1 V.V. Tsurko, A.A. Anashkina, A.N. Nekrasov
“Application of mutual information estimation 3 for predicting the structural stability of pentapeptides”
Russian Journal of Numerical Analysis and Mathematical Modelling (2020) vol.35, No.5, pp.263-271.
doi.org/10.1515/rnam-2020-0022
25 A.N. Nekrasov, Y.P. Kozmin, S.V. Kozyrev, R.H. Ziganshin, A.G. de Brevern, A.A. Anashkina
"Hierarchical Structure of Protein Sequence"
Int. J. Mol. Sci. (2021) vol.22, p.8339.
https://doi.org/10.3390/ ijms22158339
26. R.V. Chertkova1, T.V. Bryantseva1, N.A. Brazhe, K.S. Kudryashova, V.V. Revin , A.N. Nekrasov, A.I. Yusipovich, A.R. Brazhe, A.B. Rubin, D.A. Dolgikh, M.P. Kirpichnikov, G.V. Maksimov
"Aminoacid Substitutions in the non-ordered Ω-loop 70-85 Affect Electron transfer Function and Secondary Structure of Mitochondrial Cytochrome c"
Crystals (2021) vol.11, 973.
https://doi.org/10.3390/cryst 11080973
27. A.N. Nekrasov, А.А. Anashkina, А.А. Zinchenko "A new paradigm of protein structural organization" Proceedings of the 2nd International Conference "Theoretical Approaches to BioInformation Systems" (TABIS 2013) Institute of Physics Belgrade, SERBIA 2014, pp. 1-24, ISBN 978-86-82441-40-3.
https://www.researchgate.net/profile/Alexei-Nekrasov/publication/270684947_A_New_Paradigm_of_Protein_Structural_Organization/links/54b285da0cf220c63cd25c21/A-New-Paradigm-of-Protein-Structural-Organization.pdf#page=15
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