Substrate-free bioluminescent technologies for animal cells

In autonomous luminescence technologies, the substrate for the light-emitting reaction is produced by a cascade of biochemical reactions within the cells. Because of this, measurements do not require the exogenous addition of a substrate, only light detection equipment is needed. The development of autonomous luminescence technologies over the past few years suggests that they will become the platform for a whole generation of new methods for non-invasive imaging of physiological events. The ability to genetically encode the entire cascade of reactions required for luminescence opens up the possibility of non-invasively imaging virtually any molecular event at the tissue level. For example, it becomes possible by placing the genes responsible for luminescence under the control of a promoter of interest to monitor the activity of this promoter in the tissues throughout an organism's life. And by distributing luminescence genes between the pathogen and the host organism, one can receive a signal only from infected cells, and visualize the progress of the infection in real time. Our scientific team has made significant progress in developing such technologies in recent years (Mitiouchkina et al. Nature Biotechnology 2020, Shakhova et al. Nature Methods 2024). But although we were able to achieve high luminescence brightness in the tissues of plants and fungi, in animal cells the biosynthesis of the bioluminescent substrate occurs ineffectively, leading to extremely low luminescence brightness. This limitation does not yet allow the use of autonomous luminescence in biomedical applications. In this project, our goal is to create a technology for autonomous luminescence that provides sufficient brightness in animal cells to visualize physiology at the tissue level.

January 6, 2024 — December 31, 2027

Markina N.M. (PI)

Laboratory of Chemistry of Metabolic Pathways

Grant, RSF

List of publications

  1. Fadeeva AA, Osipova ZM, Chepurnykh TV, Myshkina NM (2025). Modern tumor imaging models for rodents: potential and prospects in translational medicine. Bulletin of Russian State Medical University  (2),
  2. Morozov VV, Balakireva AV, Perfilov MM, Chepurnykh TV, Yampolsky IV, Sarkisyan KS, Mishin AS (2025). Constitutive Promoters Functional in Plant, Fungal, and Bacterial Hosts. ACS Synth Biol 14 (6), 2375–2379
  3. Subach OM, Olumayowa F, Tang M, Qiao Y, Zhang Y, Vlaskina AV, Nikolaeva AY, Kononikhin AS, Agapova YK, Belousov A, Borshchevskiy V, Samygina VR, Perfilov MM, Mishin AS, Piatkevich KD, Subach FV (2025). Next-generation orange-to-far-red photoconvertible fluorescent protein for single-molecule microscopy and protein dynamic tracking. Sci Rep 15 (1), 40166
  4. Zamuner CK, Gomes TMV, Bastos EL, Palkina KA, Yampolsky IV, Bechara EJH, Stevani CV (2026). A Fungal Bioluminescent Pathway (FBP)-Based Yeast Biosensor for Caffeic Acid Quantification in Food and Beverages. ACS Sens 11 (7), 5621–5634