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November 1, 2019 — December 31, 2022

Kirpichnikov M.P. (PI), Dolgikh D.A., Feofanov A.V.

Laboratory of optical microscopy and spectroscopy of biomolecules, Bioengineering department, Laboratory of protein engineering

Grant, RSF

List of publications

  1. Новиков РВ, Бондаренко ЕА, Малюченко НВ, Феофанов АВ, Студитский ВМ, Шайтан АК (2020). Determination of the binding constant of LANA protein fragment with nucleosome. ВМУ.Биология 75 (4), 296–301
  2. Novikov RV, Bondarenko EA, Malyuchenko NV, Feofanov AV, Studitsky VM, Shaytan AK (2020). Determining the Binding Constant of LANA Protein Fragment with Nucleosome. Moscow Univ Biol Sci Bull 75 (4), 252–256
  3. Lyubitelev AV, Kirpichnikov MP, Studitsky VM (2021). The Role of Linker Histones in Carcinogenesis. Russ. J. Bioorganic Chem. 47 (1), 278–287
  4. Andreeva TV, Lyubitelev AV, Malyuchenko NV, Studitsky VM, Kirpichnikov MP, Feofanov AV (2021). Influence of Linker DNA on Nucleosome Structure according to Single-Particle Fluorescence Microscopy Data. Moscow Univ Biol Sci Bull 76 (3), 118–122
  5. Andreeva TV, Maluchenko NV, Sivkina AL, Chertkov OV, Valieva ME, Kotova EY, Kirpichnikov MP, Studitsky VM, Feofanov AV (2021). Na+ and K+ Ions Differently Affect Nucleosome Structure, Stability, and Interactions with Proteins. Microsc Microanal 28 (1), 243–253
  6. Sivkina AL, Karlova MG, Valieva ME, McCullough LL, Formosa T, Shaytan AK, Feofanov AV, Kirpichnikov MP, Sokolova OS, Studitsky VM (2022). Electron microscopy analysis of ATP-independent nucleosome unfolding by FACT. Commun Biol 5 (1), 2
  7. Moiseenko AV, Loiko NG, Chertkov OV, Feofanov AV, Krupyanskii YF, Sokolova OS (2019). Analysis of Element Composition of DNA-Protein Crystals In Vitro. Moscow Univ Biol Sci Bull 74 (4), 240–245
  8. Orekhov PS, Bozdaganyan ME, Voskoboynikova N, Mulkidjanian AY, Karlova MG, Yudenko A, Remeeva A, Ryzhykau YL, Gushchin I, Gordeliy VI, Sokolova OS, Steinhoff HJ, Kirpichnikov MP, Shaitan KV (2022). Mechanisms of Formation, Structure, and Dynamics of Lipoprotein Discs Stabilized by Amphiphilic Copolymers: A Comprehensive Review. Nanomaterials (Basel) 12 (3), 361
  9. Chang HW, Feofanov AV, Lyubitelev AV, Armeev GA, Kotova EY, Hsieh FK, Kirpichnikov MP, Shaytan AK, Studitsky VM (2022). N-Terminal Tails of Histones H2A and H2B Differentially Affect Transcription by RNA Polymerase II In Vitro. Cells 11 (16),
  10. Gerasimova NS, Volokh OI, Pestov NA, Armeev GA, Kirpichnikov MP, Shaytan AK, Sokolova OS, Studitsky VM (2022). Structure of an Intranucleosomal DNA Loop That Senses DNA Damage during Transcription. Cells 11 (17),
  11. Malinina DK, Sivkina AL, Korovina AN, McCullough LL, Formosa T, Kirpichnikov MP, Studitsky VM, Feofanov AV (2022). Hmo1 Protein Affects the Nucleosome Structure and Supports the Nucleosome Reorganization Activity of Yeast FACT. Cells 11 (19),
  12. Marilovtseva EV, Studitsky VM (2021). Guanine Quadruplexes in Cell Nucleus Metabolism. Mol Biol 55 (5), 705–726
  13. Stefanova ME, Volokh OI, Chertkov OV, Armeev GA, Shaytan AK, Feofanov AV, Kirpichnikov MP, Sokolova OS, Studitsky VM (2023). Structure and Dynamics of Compact Dinucleosomes: Analysis by Electron Microscopy and spFRET. Int J Mol Sci 24 (15),
  14. Andreeva TV, Maluchenko NV, Efremenko AV, Lyubitelev AV, Korovina AN, Afonin DA, Kirpichnikov MP, Studitsky VM, Feofanov AV (2023). Epigallocatechin Gallate Affects the Structure of Chromatosomes, Nucleosomes and Their Complexes with PARP1. Int J Mol Sci 24 (18),
  15. Oleinikov PD, Fedulova AS, Armeev GA, Motorin NA, Singh-Palchevskaia L, Sivkina AL, Feskin PG, Glukhov GS, Afonin DA, Komarova GA, Kirpichnikov MP, Studitsky VM, Feofanov AV, Shaytan AK (2023). Interactions of Nucleosomes with Acidic Patch-Binding Peptides: A Combined Structural Bioinformatics, Molecular Modeling, Fluorescence Polarization, and Single-Molecule FRET Study. Int J Mol Sci 24 (20), 15194
  16. Malinina DK, Armeev GA, Geraskina OV, Korovina AN, Studitsky VM, Feofanov AV (2024). Complexes of HMO1 with DNA: Structure and Affinity. Biomolecules 14 (9), 1184
  17. Koshkina DO, Maluchenko NV, Korovina AN, Lobanova AA, Feofanov AV, Studitsky VM (2024). Resveratrol Inhibits Nucleosome Binding and Catalytic Activity of PARP1. Biomolecules 14 (11), 1398
  18. Motorin NA, Makarov GI, Rekstina VV, Evtushenko EG, Sabirzyanov FA, Ziganshin RH, Shaytan AK, Kalebina TS (2024). Yeast Glucan Remodeling Protein Bgl2p: Amyloid Properties and the Mode of Attachment in Cell Wall. Int J Mol Sci 25 (24),