RUSSIAN ACADEMY OF SCIENCES
Shemyakin & Ovchinikov Institute of Bioorganic Chemistry
Laboratory of Molecular Technologies
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General information
Professional appointments
Education
Scientific background
Publications

Ekaterina A. Bogdanova

GENERAL INFORMATION
Born: October 2, 1969, Moscow, Russia (USSR)
Citizenship: Russia
Business address:
Shemyakin and Ovchinnikov Institute of Bioorganic Chemistry, Micklukho-Maklaya 16/10, 117871, Moscow, Russia;
tel: 7(495) 429-80-20
fax: 7(495) 330-70-56
e-mail: katya@ibch.ru

PROFESSIONAL APPOINTMENTS
Research scientist, Shemyakin and Ovchinnikov Institute of Bioorganic Chemistry, Russian Academy of Sciences, Moscow, Russia. Laboratory of Molecular Technologies (prev. Laboratory of Genes for Regeneration).

EDUCATION
1988- 1993 Molecular Biology Department, Moscow State University (Moscow, Russia.)
Macluralisin - a serin proteinase from fruits of Maclura pomifera (Raf.) Schneid

SCIENTIFIC BACKGROUND
1991-1993 Research assistant. Chemistry Department of Moscow State University, Moscow, Russia. Laboratory headed by Prof. V.M. Stepanov (supervisor was Dr. G.N.Rudenskaya).
Area of research: protein chemistry.
1993-1998 Junior scientist. Laboratory of Structure and Function of Human Genes, Shemyakin Institute of Bioorganic Chemistry, Russian Academy of Sciences, Moscow, Russia. headed by Prof. E.D. Sverdlov.
Areas of research: genetic control of regeneration, cDNA-subtraction.
1998 – until present Research Scientist. Laboratory of Molecular Technologies (prev. Laboratory of Genes for Regeneration), Shemyakin Institute of Bioorganic Chemistry, Russian Academy of Sciences, Moscow, Russia. headed by Dr. S.A. Lukyanov.
Areas of research: analysis of gene expression, bioinformatics
Ph.D. thesis: “Identification of genes differentially expressed during planarian regeneration” – May 19, 1999. Supervisor - Prof. E.D. Sverdlov.

PUBLICATIONS
  1. Markvicheva KN, Bogdanova EA, Staroverov DB, Lukyanov S, Belousov VV.
    Imaging of intracellular hydrogen peroxide production with HyPer upon stimulation of HeLa cells with EGF.
    In: Redox-Mediated Signal Transduction Methods and Protocols Series: Methods in Molecular Biology, Vol. 476 Hancock, John T. (Ed.) Hardcover, 2009 ISBN: 978-1-58829-842-3

  2. Anisimova VE, Barsova EV, Bogdanova EA, Lukyanov SA, Shcheglov AS.
    Thermolabile duplex-specific nuclease.
    Biotechnol Lett, 2008; [Epub ahead of print]
    PMID: 18810329

  3. Anisimova VE, Shcheglov AS, Bogdanova EA, Rebrikov DV, Nekrasov AN, Barsova EV, Shagin DA, Lukyanov SA.
    Is crab duplex-specific nuclease a member of the Serratia family of non-specific nucleases?
    Gene. 2008 Jul 15;418(1-2):41-8
    PMID: 18514436

  4. Bogdanova EA, Shagin DA, Lukyanov SA.
    Normalization of full-length enriched cDNA.
    Mol Biosyst. 2008 Mar;4(3):205-12
    PMID: 18437263

  5. Shcheglov A, Zhulidov P, Bogdanova E, Shagin D.
    Generation of normalized cDNA libraries.
    In: Nucleic Acids Hybridization: Modern Applications. Buzdin, Anton; Lukyanov, Sergey (Eds.) Hardcover, 2007; 97-124 ISBN: 978-1-4020-6039-7
    FULL TEXT

  6. Lukyanov S, Lukyanov K, Gurskaya N, Bogdanova E, Buzdin A.
    Selective suppression of polymerase chain reaction and its most popular applications.
    In: Nucleic Acids Hybridization: Modern Applications. Buzdin, Anton; Lukyanov, Sergey (Eds.) Hardcover, 2007; 29-51 ISBN: 978-1-4020-6039-7
    FULL TEXT

  7. Shcherbo D, Merzlyak EM, Chepurnykh TV, Fradkov AF, Ermakova GV, Solovieva EA, Lukyanov KA, Bogdanova EA, Zaraisky AG, Lukyanov S, Chudakov DM.
    Bright far-red fluorescent protein for whole-body imaging.
    Nat Methods. 2007 Sep;4(9):741-6
    PMID: 17721542

  8. Altshuler IM, Zhulidov PA, Bogdanova EA, Mudrik NN, Shagin DA.
    Application of the duplex-specific nuclease preference method to the analysis of point mutations in human genes.
    Bioorg Khim. 2005 Nov-Dec;31(6):627-36 (in Russian)
    PMID: 16363136

  9. Zhulidov PA, Bogdanova EA, Shcheglov AS, Shagina IA, Wagner LL, Khazpekov GL, Kozhemyako VV, Lukyanov SA, Shagin DA.
    A method for the preparation of normalized cDNA libraries enriched with full-length sequences.
    Bioorg Khim. 2005 Mar-Apr;31(2):186-94 (in Russian)
    PMID: 15889793

  10. Bogdanova EA, Barsova EV, Pounkova NI, Britanova OV, Shagin DA, Gurskaya NG, Usman NIu, Lukyanov SA.
    A family of genes of multidomain free lectins from a planarian: structure, expression, and use as markers for regeneration monitoring.
    Bioorg Khim. 2004 Nov-Dec;30(6):626-37 (in Russian)
    PMID: 15586815

  11. Kozhemyako VB, Rebrikov DV, Lukyanov SA, Bogdanova EA, Marin A, Mazur AK, Kovalchuk SN, Agafonova EV, Sova VV, Elyakova LA, Rasskazov VA.
    Molecular cloning and characterization of an endo-1,3-beta-D-glucanase from the mollusk Spisula sachalinensis.
    Comp Biochem Physiol B Biochem Mol Biol. 2004 Feb;137(2):169-78
    PMID: 14990213

  12. Zhulidov PA, Bogdanova EA, Shcheglov AS, Vagner LL, Khaspekov GL, Kozhemyako VB, Matz MV, Meleshkevitch E, Moroz LL, Lukyanov SA, Shagin DA.
    Simple cDNA normalization using kamchatka crab duplex-specific nuclease.
    Nucleic Acids Res. 2004 Feb 18;32(3):e37
    PMID: 14973331

  13. Shagin DA, Rebrikov DV, Kozhemyako VB, Altshuler IM, Shcheglov AS, Zhulidov PA, Bogdanova EA, Staroverov DB, Rasskazov VA, Lukyanov S.
    A novel method for SNP detection using a new duplex-specific nuclease from crab hepatopancreas.
    Genome Res. 2002 Dec;12(12):1935-42
    PMID: 12466298

  14. Rebrikov DV, Bogdanova EA, Bulina ME, Lukyanov SA.
    A new planarian extrachromosomal virus-like element revealed by subtraction hybridization.
    Mol Biol (Mosk). 2002 Nov-Dec;36(6):1002-11 (in Russian)
    PMID: 12500537

  15. Shagin DA, Barsova EV, Bogdanova E, Britanova OV, Gurskaya N, Lukyanov KA, Matz MV, Pounkova NI, Usman NY, Kopantzev EP, Salo E, Lukyanov SA.
    Identification and characterization of a new family of C-type lectin-like genes from planaria Girardia tigrina.
    Glycobiology. 2002 Aug;12(8):463-72
    PMID: 12145187

  16. Rebrikov DV, Bulina ME, Bogdanova EA, Wagner LL, Lukyanov SA.
    Complete genome sequence of a novel extrachromosomal virus-like element identified in planarian Girardia tigrina.
    BMC Genomics. 2002 Jun 13;3(1):15
    PMID: 12065025
    FULL TEXT

  17. Lukyanov KA, Gurskaya NG, Bogdanova EA, Lukyanov SA.
    Selective suppression of polymerase chain reaction.
    Bioorg Khim. 1999 Mar;25(3):163-70 (in Russian)
    PMID: 10382038
    FULL TEXT

  18. Matz M, Shagin D, Bogdanova E, Britanova O, Lukyanov S, Diatchenko L, Chenchik A.
    Amplification of cDNA ends based on template-switching effect and step-out PCR.
    Nucleic Acids Res. 1999 Mar 15;27(6):1558-60
    PMID: 10037822

  19. Matz MV, Shagin DA, Usman NIu, Bogdanova EA, Fradkov AF, Soboleva TA, Lukyanov SA.
    Cloning of region-specific genetic markers of planaria using a new method--ordered differential display.
    Bioorg Khim. 1998 Dec;24(12):910-5 (in Russian)
    PMID: 10079949

  20. Bogdanova E, Matz M, Tarabykin V, Usman N, Shagin D, Zaraisky A, Lukyanov S.
    Inductive interactions regulating body patterning in planarian, revealed by analysis of expression of novel gene scarf.
    Dev Biol. 1998 Feb 15;194(2):172-81
    PMID: 9501028

  21. Matz M, Usman N, Shagin D, Bogdanova E, Lukyanov S.
    Ordered differential display: a simple method for systematic comparison of gene expression profiles.
    Nucleic Acids Res. 1997 Jun 15;25(12):2541-2
    PMID: 9171114

  22. Bogdanova EA, Matz MV, Tarabykin VS, Usman NIu, Lukyanov SA.
    Differential gene expression during the reparative regeneration of differing polarities in planarians.
    Ontogenez. 1997 Mar-Apr;28(2):132-7 (in Russian)
    PMID: 9173352

  23. Zavalova L, Lukyanov S, Baskova I, Snezhkov E, Akopov S, Berezhnoy S, Bogdanova E, Barsova E, Sverdlov ED.
    Genes from the medicinal leech (Hirudo medicinalis) coding for unusual enzymes that specifically cleave endo-epsilon (gamma-Glu)-Lys isopeptide bonds and help to dissolve blood clots.
    Mol Gen Genet. 1996 Nov 27;253(1-2):20-5
    PMID: 9003282

  24. Lukyanov KA, Matz MV, Bogdanova EA, Gurskaya NG, Lukyanov SA.
    Molecule by molecule PCR amplification of complex DNA mixtures for direct sequencing: an approach to in vitro cloning.
    Nucleic Acids Res. 1996 Jun 1;24(11):2194-5
    PMID: 8668555

  25. Rudenskaya GN, Bogdanova EA, Revina LP, Golovkin BN, Stepanov VM.
    Macluralisin--a serine proteinase from fruits of Maclura pomifera (Raf.) Schneid.
    Planta. 1995;196(1):174-9
    PMID: 7767235